HESML introductory article

[1] Lastra-Díaz, J. J., García-Serrano, A., Batet, M., Fernández, M. and Chirigati, F. (2017). HESML: a scalable ontology-based semantic similarity measures library with a set of reproducible experiments and a replication dataset. Information Systems 66, 97-118. http://dx.doi.org/10.1016/j.is.2017.02.002

HESML for the biomedical domain

[2] Lastra-Díaz, J.J., Lara-Clares, A. & Garcia-Serrano, A. HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey. BMC Bioinformatics, Vol = 23, Num = 23 (2022). https://doi.org/10.1186/s12859-021-04539-0 | https://rdcu.be/cEvsU.

Publications

[3] Lara-Clares A, Lastra-Díaz JJ, Garcia-Serrano A. Protocol for a reproducible experimental survey on biomedical sentence similarity. PLoS One. 2021;16: e0248663. https://doi.org/10.1371/journal.pone.0248663

[4] J.J. Lastra-Díaz, Goikoetxea, M. Hadj Taieb, A. García-Serrano, M. Ben Aouicha, E. Agirre. A large reproducible benchmark of ontology-based methods and word embeddings for word similarity. Inf Syst. 2020; 101636. https://doi.org/10.1016/j.is.2020.101636

[5] J.J. Lastra-Díaz, J. Goikoetxea, M. Hadj Taieb, A. García-Serrano, M. Ben Aouicha, E. Agirre, A reproducible survey on word embeddings and ontology-based methods for word similarity: linear combinations outperform the state of the art, Engineering Applications of Artificial Intelligence. 85 (2019) 645–665. https://doi.org/10.1016/j.engappai.2019.07.010

[6] J.J. Lastra-Díaz, J. Goikoetxea, M. Hadj Taieb, A. García-Serrano, M. Ben Aouicha, E. Agirre, Reproducibility dataset for a large experimental survey on word embeddings and ontology-based methods for word similarity, Data in Brief. 26 (2019). https://doi.org/10.1016/j.dib.2019.104432.

[7] Lastra Díaz, J. J., & García Serrano, A. (2016). System and method for the indexing and retrieval of semantically annotated data using an ontology-based information retrieval model. United States Patent and Trademark Office (USPTO) Application, US2016/0179945 A1.

[8] Lastra-Díaz, J. J., & García-Serrano, A. (2016). A refinement of the well-founded Information Content models with a very detailed experimental survey on WordNet. Universidad Nacional de Educación a Distancia (UNED). http://e-spacio.uned.es/fez/view/bibliuned:DptoLSI-ETSI-Informes-Jlastra-refinement

[9] Lastra-Díaz, J. J., & García-Serrano, A. (2015). A new family of information content models with an experimental survey on WordNet. Knowledge-Based Systems, 89, 509-526. http://dx.doi.org/10.1016/j.knosys.2015.08.019

[10] Lastra-Díaz, J. J., & García-Serrano, A. (2015). A novel family of IC-based similarity measures with a detailed experimental survey on WordNet. Engineering Applications of Artificial Intelligence Journal, 46, 140-153. http://dx.doi.org/10.1016/j.engappai.2015.09.006

Dataset with HESML versions

• HESML V1R5 : Juan J. Lastra-Díaz; Alicia Lara-Clares; Ana Garcı́a-Serrano, 2020, "HESML V1R5 Java software library of ontology-based semantic similarity measures and information content models", https://doi.org/10.21950/1RRAWJ, e-cienciaDatos, V1
• HESML V1R4 : Lastra-Diaz, Juan J.; Garcia-Serrano, Ana (2018), "HESML V1R4 Java software library of ontology-based semantic similarity measures and information content models", Mendeley Data, V4, doi: 10.17632/t87s78dg78.4 http://dx.doi.org/10.17632/t87s78dg78.4
• HESML V1R3 : Lastra-Diaz, Juan J.; Garcia-Serrano, Ana (2017), "HESML V1R3 Java software library of ontology-based semantic similarity measures and information content models", Mendeley Data, V3, doi: 10.17632/t87s78dg78.3 http://dx.doi.org/10.17632/t87s78dg78.3
• HESML V1R2 : Lastra-Diaz, Juan J.; Garcia-Serrano, Ana (2016), "HESML V1R2 Java software library of ontology-based semantic similarity measures and information content models", Mendeley Data, V2, doi: 10.17632/t87s78dg78.2 http://dx.doi.org/10.17632/t87s78dg78.2
• HESML V1R1 : Lastra-Diaz, Juan J.; Garcia-Serrano, Ana (2016), "HESML V1R1 Java software library of ontology-based semantic similarity measures and information content models", Mendeley Data, V1, doi: 10.17632/t87s78dg78.1 http://dx.doi.org/10.17632/t87s78dg78.1

Reproducibility datasets and protocols

• Lastra-Díaz, Juan J; Lara-Clares, Alicia; Garcia-Serrano, Ana, 2020, "Reproducibility dataset for a benchmark of biomedical semantic measures libraries", https://doi.org/10.21950/OTDA4Z, e-cienciaDatos, V5
• Lastra-Díaz, Juan J.; Goikoetxea, Josu; Hadj Taieb, Mohamed Ali; Garcia-Serrano, Ana; Ben Aouicha, Mohamed; Agirre, Eneko, 2019, "Word similarity benchmarks of recent word embedding models and ontology-based semantic similarity measures", https://doi.org/10.21950/AQ1CVX, e-cienciaDatos, V2
• Lastra-Diaz, Juan J.; Garcia-Serrano, Ana (2016), "WordNet-based word similarity reproducible experiments based on HESML V1R1 and ReproZip", Mendeley Data, V1, doi: 10.17632/65pxgskhz9.1
• Lastra-Diaz, Juan J.; Garcia-Serrano, Ana (2016), "HESML_vs_SML: scalability and performance benchmarks between the HESML V1R2 and SML 0.9 semantic measures libraries", Mendeley Data, V1, doi: 10.17632/5hg3z85wf4.1